Add automatic schema versioning with startup migration
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On startup, the app now checks if the database schema version matches the code. If there's a mismatch or no version exists, it automatically runs a full data migration before starting. - Add backend/version.py with SCHEMA_VERSION constant - Add backend/migration.py with extracted migration logic - Add SchemaVersion model to track DB version - Add version check functions to database.py - Update app.py lifespan to use check_and_migrate_if_needed() - Simplify migrate_csv_to_db.py to use shared logic Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
This commit is contained in:
@@ -26,7 +26,7 @@ from .data_loader import (
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geocode_single_postcode,
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geocode_single_postcode,
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)
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)
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from .data_loader import get_data_info as get_db_info
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from .data_loader import get_data_info as get_db_info
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from .database import init_db
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from .database import check_and_migrate_if_needed
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from .schemas import METRIC_DEFINITIONS, RANKING_COLUMNS, SCHOOL_COLUMNS
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from .schemas import METRIC_DEFINITIONS, RANKING_COLUMNS, SCHOOL_COLUMNS
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from .utils import clean_for_json
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from .utils import clean_for_json
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@@ -135,16 +135,16 @@ def validate_postcode(postcode: Optional[str]) -> Optional[str]:
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@asynccontextmanager
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@asynccontextmanager
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async def lifespan(app: FastAPI):
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async def lifespan(app: FastAPI):
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"""Application lifespan - startup and shutdown events."""
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"""Application lifespan - startup and shutdown events."""
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# Startup: initialize database and pre-load data
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# Startup: check schema version and migrate if needed
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print("Starting up: Initializing database...")
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print("Starting up: Checking database schema...")
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init_db() # Ensure tables exist
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check_and_migrate_if_needed()
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print("Loading school data from database...")
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print("Loading school data from database...")
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df = load_school_data()
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df = load_school_data()
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if df.empty:
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if df.empty:
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print("Warning: No data in database. Run the migration script to import data.")
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print("Warning: No data in database. Check CSV files in data/ folder.")
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else:
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else:
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print("Data loaded successfully.")
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print(f"Data loaded successfully: {len(df)} records.")
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yield # Application runs here
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yield # Application runs here
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@@ -2,7 +2,10 @@
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Database connection setup using SQLAlchemy.
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Database connection setup using SQLAlchemy.
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"""
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"""
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from sqlalchemy import create_engine
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from datetime import datetime
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from typing import Optional
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from sqlalchemy import create_engine, inspect
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from sqlalchemy.orm import sessionmaker, declarative_base
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from sqlalchemy.orm import sessionmaker, declarative_base
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from contextlib import contextmanager
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from contextlib import contextmanager
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@@ -65,3 +68,80 @@ def drop_db():
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"""
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"""
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Base.metadata.drop_all(bind=engine)
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Base.metadata.drop_all(bind=engine)
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def get_db_schema_version() -> Optional[int]:
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"""
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Get the current schema version from the database.
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Returns None if table doesn't exist or no version is set.
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"""
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from .models import SchemaVersion # Import here to avoid circular imports
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# Check if schema_version table exists
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inspector = inspect(engine)
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if "schema_version" not in inspector.get_table_names():
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return None
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try:
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with get_db_session() as db:
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row = db.query(SchemaVersion).first()
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return row.version if row else None
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except Exception:
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return None
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def set_db_schema_version(version: int):
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"""
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Set/update the schema version in the database.
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Creates the row if it doesn't exist.
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"""
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from .models import SchemaVersion
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with get_db_session() as db:
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row = db.query(SchemaVersion).first()
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if row:
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row.version = version
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row.migrated_at = datetime.utcnow()
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else:
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db.add(SchemaVersion(id=1, version=version, migrated_at=datetime.utcnow()))
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def check_and_migrate_if_needed():
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"""
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Check schema version and run migration if needed.
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Called during application startup.
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"""
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from .version import SCHEMA_VERSION
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from .migration import run_full_migration
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db_version = get_db_schema_version()
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if db_version == SCHEMA_VERSION:
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print(f"Schema version {SCHEMA_VERSION} matches. Fast startup.")
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# Still ensure tables exist (they should if version matches)
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init_db()
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return
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if db_version is None:
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print(f"No schema version found. Running initial migration (v{SCHEMA_VERSION})...")
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else:
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print(f"Schema mismatch: DB has v{db_version}, code expects v{SCHEMA_VERSION}")
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print("Running full migration...")
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try:
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success = run_full_migration(geocode=False)
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if success:
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# Ensure schema_version table exists before writing
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init_db()
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set_db_schema_version(SCHEMA_VERSION)
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print(f"Migration complete. Schema version set to {SCHEMA_VERSION}")
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else:
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print("Warning: Migration completed but no data was imported.")
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init_db()
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set_db_schema_version(SCHEMA_VERSION)
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except Exception as e:
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print(f"FATAL: Migration failed: {e}")
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print("Application cannot start. Please check database and CSV files.")
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raise
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413
backend/migration.py
Normal file
413
backend/migration.py
Normal file
@@ -0,0 +1,413 @@
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"""
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Database migration logic for importing CSV data.
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Used by both CLI script and automatic startup migration.
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"""
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import re
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from pathlib import Path
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from typing import Dict, Optional
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import numpy as np
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import pandas as pd
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import requests
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from .config import settings
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from .database import Base, engine, get_db_session
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from .models import School, SchoolResult
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from .schemas import (
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COLUMN_MAPPINGS,
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LA_CODE_TO_NAME,
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NULL_VALUES,
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SCHOOL_TYPE_MAP,
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)
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def parse_numeric(value) -> Optional[float]:
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"""Parse a numeric value, handling special cases."""
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if pd.isna(value):
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return None
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if isinstance(value, (int, float)):
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return float(value) if not np.isnan(value) else None
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str_val = str(value).strip().upper()
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if str_val in NULL_VALUES or str_val == "":
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return None
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# Remove percentage signs if present
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str_val = str_val.replace("%", "")
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try:
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return float(str_val)
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except ValueError:
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return None
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def extract_year_from_folder(folder_name: str) -> Optional[int]:
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"""Extract year from folder name like '2023-2024'."""
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match = re.search(r"(\d{4})-(\d{4})", folder_name)
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if match:
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return int(match.group(2))
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match = re.search(r"(\d{4})", folder_name)
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if match:
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return int(match.group(1))
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return None
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def geocode_postcodes_bulk(postcodes: list) -> Dict[str, tuple]:
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"""
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Geocode postcodes in bulk using postcodes.io API.
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Returns dict of postcode -> (latitude, longitude).
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"""
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results = {}
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valid_postcodes = [
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p.strip().upper()
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for p in postcodes
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if p and isinstance(p, str) and len(p.strip()) >= 5
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]
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valid_postcodes = list(set(valid_postcodes))
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if not valid_postcodes:
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return results
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batch_size = 100
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total_batches = (len(valid_postcodes) + batch_size - 1) // batch_size
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for i, batch_start in enumerate(range(0, len(valid_postcodes), batch_size)):
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batch = valid_postcodes[batch_start : batch_start + batch_size]
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print(
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f" Geocoding batch {i + 1}/{total_batches} ({len(batch)} postcodes)..."
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)
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try:
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response = requests.post(
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"https://api.postcodes.io/postcodes",
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json={"postcodes": batch},
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timeout=30,
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)
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if response.status_code == 200:
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data = response.json()
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for item in data.get("result", []):
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if item and item.get("result"):
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pc = item["query"].upper()
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lat = item["result"].get("latitude")
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lon = item["result"].get("longitude")
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if lat and lon:
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results[pc] = (lat, lon)
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except Exception as e:
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print(f" Warning: Geocoding batch failed: {e}")
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return results
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def load_csv_data(data_dir: Path) -> pd.DataFrame:
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"""Load all CSV data from data directory."""
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all_data = []
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for folder in sorted(data_dir.iterdir()):
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if not folder.is_dir():
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continue
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year = extract_year_from_folder(folder.name)
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if not year:
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continue
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# Specifically look for the KS2 results file
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ks2_file = folder / "england_ks2final.csv"
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if not ks2_file.exists():
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continue
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csv_file = ks2_file
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print(f" Loading {csv_file.name} (year {year})...")
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try:
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df = pd.read_csv(csv_file, encoding="latin-1", low_memory=False)
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except Exception as e:
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print(f" Error loading {csv_file}: {e}")
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continue
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# Rename columns
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df.rename(columns=COLUMN_MAPPINGS, inplace=True)
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df["year"] = year
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# Handle local authority name
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la_name_cols = ["LANAME", "LA (name)", "LA_NAME", "LA NAME"]
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la_name_col = next((c for c in la_name_cols if c in df.columns), None)
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if la_name_col and la_name_col != "local_authority":
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df["local_authority"] = df[la_name_col]
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elif "LEA" in df.columns:
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df["local_authority_code"] = pd.to_numeric(df["LEA"], errors="coerce")
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df["local_authority"] = (
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df["local_authority_code"]
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.map(LA_CODE_TO_NAME)
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.fillna(df["LEA"].astype(str))
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)
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# Store LEA code
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if "LEA" in df.columns:
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df["local_authority_code"] = pd.to_numeric(df["LEA"], errors="coerce")
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# Map school type
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if "school_type_code" in df.columns:
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df["school_type"] = (
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df["school_type_code"]
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.map(SCHOOL_TYPE_MAP)
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.fillna(df["school_type_code"])
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)
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# Create combined address
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addr_parts = ["address1", "address2", "town", "postcode"]
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for col in addr_parts:
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if col not in df.columns:
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df[col] = None
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df["address"] = df.apply(
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lambda r: ", ".join(
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str(v)
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for v in [
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r.get("address1"),
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r.get("address2"),
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r.get("town"),
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r.get("postcode"),
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]
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if pd.notna(v) and str(v).strip()
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),
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axis=1,
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)
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all_data.append(df)
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print(f" Loaded {len(df)} records")
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if all_data:
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result = pd.concat(all_data, ignore_index=True)
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print(f"\nTotal records loaded: {len(result)}")
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print(f"Unique schools: {result['urn'].nunique()}")
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print(f"Years: {sorted(result['year'].unique())}")
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return result
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return pd.DataFrame()
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def migrate_data(df: pd.DataFrame, geocode: bool = False):
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"""Migrate DataFrame data to database."""
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# Clean URN column - convert to integer, drop invalid values
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df = df.copy()
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df["urn"] = pd.to_numeric(df["urn"], errors="coerce")
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df = df.dropna(subset=["urn"])
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df["urn"] = df["urn"].astype(int)
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# Group by URN to get unique schools (use latest year's data)
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school_data = (
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df.sort_values("year", ascending=False).groupby("urn").first().reset_index()
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)
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print(f"\nMigrating {len(school_data)} unique schools...")
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# Geocode if requested
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geocoded = {}
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if geocode and "postcode" in df.columns:
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print("\nGeocoding postcodes...")
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postcodes = df["postcode"].dropna().unique().tolist()
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geocoded = geocode_postcodes_bulk(postcodes)
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print(f" Successfully geocoded {len(geocoded)} postcodes")
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with get_db_session() as db:
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# Create schools
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|
urn_to_school_id = {}
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schools_created = 0
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|
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for _, row in school_data.iterrows():
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# Safely parse URN - handle None, NaN, whitespace, and invalid values
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urn_val = row.get("urn")
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urn = None
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if pd.notna(urn_val):
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try:
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urn_str = str(urn_val).strip()
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|
if urn_str:
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urn = int(float(urn_str)) # Handle "12345.0" format
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|
except (ValueError, TypeError):
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|
pass
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|
if not urn:
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|
continue
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|
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|
# Skip if we've already added this URN (handles duplicates in source data)
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|
if urn in urn_to_school_id:
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|
continue
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|
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|
# Get geocoding data
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|
postcode = row.get("postcode")
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|
lat, lon = None, None
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|
if postcode and pd.notna(postcode):
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coords = geocoded.get(str(postcode).strip().upper())
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if coords:
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|
lat, lon = coords
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|
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|
# Safely parse local_authority_code
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|
la_code = None
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|
la_code_val = row.get("local_authority_code")
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|
if pd.notna(la_code_val):
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|
try:
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|
la_code_str = str(la_code_val).strip()
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|
if la_code_str:
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|
la_code = int(float(la_code_str))
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|
except (ValueError, TypeError):
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|
pass
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|
|
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|
school = School(
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|
urn=urn,
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|
school_name=row.get("school_name")
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|
if pd.notna(row.get("school_name"))
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|
else "Unknown",
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|
local_authority=row.get("local_authority")
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|
if pd.notna(row.get("local_authority"))
|
||||||
|
else None,
|
||||||
|
local_authority_code=la_code,
|
||||||
|
school_type=row.get("school_type")
|
||||||
|
if pd.notna(row.get("school_type"))
|
||||||
|
else None,
|
||||||
|
school_type_code=row.get("school_type_code")
|
||||||
|
if pd.notna(row.get("school_type_code"))
|
||||||
|
else None,
|
||||||
|
religious_denomination=row.get("religious_denomination")
|
||||||
|
if pd.notna(row.get("religious_denomination"))
|
||||||
|
else None,
|
||||||
|
age_range=row.get("age_range")
|
||||||
|
if pd.notna(row.get("age_range"))
|
||||||
|
else None,
|
||||||
|
address1=row.get("address1") if pd.notna(row.get("address1")) else None,
|
||||||
|
address2=row.get("address2") if pd.notna(row.get("address2")) else None,
|
||||||
|
town=row.get("town") if pd.notna(row.get("town")) else None,
|
||||||
|
postcode=row.get("postcode") if pd.notna(row.get("postcode")) else None,
|
||||||
|
latitude=lat,
|
||||||
|
longitude=lon,
|
||||||
|
)
|
||||||
|
db.add(school)
|
||||||
|
db.flush() # Get the ID
|
||||||
|
urn_to_school_id[urn] = school.id
|
||||||
|
schools_created += 1
|
||||||
|
|
||||||
|
if schools_created % 1000 == 0:
|
||||||
|
print(f" Created {schools_created} schools...")
|
||||||
|
|
||||||
|
print(f" Created {schools_created} schools")
|
||||||
|
|
||||||
|
# Create results
|
||||||
|
print(f"\nMigrating {len(df)} yearly results...")
|
||||||
|
results_created = 0
|
||||||
|
|
||||||
|
for _, row in df.iterrows():
|
||||||
|
# Safely parse URN
|
||||||
|
urn_val = row.get("urn")
|
||||||
|
urn = None
|
||||||
|
if pd.notna(urn_val):
|
||||||
|
try:
|
||||||
|
urn_str = str(urn_val).strip()
|
||||||
|
if urn_str:
|
||||||
|
urn = int(float(urn_str))
|
||||||
|
except (ValueError, TypeError):
|
||||||
|
pass
|
||||||
|
if not urn or urn not in urn_to_school_id:
|
||||||
|
continue
|
||||||
|
|
||||||
|
school_id = urn_to_school_id[urn]
|
||||||
|
|
||||||
|
# Safely parse year
|
||||||
|
year_val = row.get("year")
|
||||||
|
year = None
|
||||||
|
if pd.notna(year_val):
|
||||||
|
try:
|
||||||
|
year = int(float(str(year_val).strip()))
|
||||||
|
except (ValueError, TypeError):
|
||||||
|
pass
|
||||||
|
if not year:
|
||||||
|
continue
|
||||||
|
|
||||||
|
result = SchoolResult(
|
||||||
|
school_id=school_id,
|
||||||
|
year=year,
|
||||||
|
total_pupils=parse_numeric(row.get("total_pupils")),
|
||||||
|
eligible_pupils=parse_numeric(row.get("eligible_pupils")),
|
||||||
|
# Expected Standard
|
||||||
|
rwm_expected_pct=parse_numeric(row.get("rwm_expected_pct")),
|
||||||
|
reading_expected_pct=parse_numeric(row.get("reading_expected_pct")),
|
||||||
|
writing_expected_pct=parse_numeric(row.get("writing_expected_pct")),
|
||||||
|
maths_expected_pct=parse_numeric(row.get("maths_expected_pct")),
|
||||||
|
gps_expected_pct=parse_numeric(row.get("gps_expected_pct")),
|
||||||
|
science_expected_pct=parse_numeric(row.get("science_expected_pct")),
|
||||||
|
# Higher Standard
|
||||||
|
rwm_high_pct=parse_numeric(row.get("rwm_high_pct")),
|
||||||
|
reading_high_pct=parse_numeric(row.get("reading_high_pct")),
|
||||||
|
writing_high_pct=parse_numeric(row.get("writing_high_pct")),
|
||||||
|
maths_high_pct=parse_numeric(row.get("maths_high_pct")),
|
||||||
|
gps_high_pct=parse_numeric(row.get("gps_high_pct")),
|
||||||
|
# Progress
|
||||||
|
reading_progress=parse_numeric(row.get("reading_progress")),
|
||||||
|
writing_progress=parse_numeric(row.get("writing_progress")),
|
||||||
|
maths_progress=parse_numeric(row.get("maths_progress")),
|
||||||
|
# Averages
|
||||||
|
reading_avg_score=parse_numeric(row.get("reading_avg_score")),
|
||||||
|
maths_avg_score=parse_numeric(row.get("maths_avg_score")),
|
||||||
|
gps_avg_score=parse_numeric(row.get("gps_avg_score")),
|
||||||
|
# Context
|
||||||
|
disadvantaged_pct=parse_numeric(row.get("disadvantaged_pct")),
|
||||||
|
eal_pct=parse_numeric(row.get("eal_pct")),
|
||||||
|
sen_support_pct=parse_numeric(row.get("sen_support_pct")),
|
||||||
|
sen_ehcp_pct=parse_numeric(row.get("sen_ehcp_pct")),
|
||||||
|
stability_pct=parse_numeric(row.get("stability_pct")),
|
||||||
|
# Absence
|
||||||
|
reading_absence_pct=parse_numeric(row.get("reading_absence_pct")),
|
||||||
|
gps_absence_pct=parse_numeric(row.get("gps_absence_pct")),
|
||||||
|
maths_absence_pct=parse_numeric(row.get("maths_absence_pct")),
|
||||||
|
writing_absence_pct=parse_numeric(row.get("writing_absence_pct")),
|
||||||
|
science_absence_pct=parse_numeric(row.get("science_absence_pct")),
|
||||||
|
# Gender
|
||||||
|
rwm_expected_boys_pct=parse_numeric(row.get("rwm_expected_boys_pct")),
|
||||||
|
rwm_expected_girls_pct=parse_numeric(row.get("rwm_expected_girls_pct")),
|
||||||
|
rwm_high_boys_pct=parse_numeric(row.get("rwm_high_boys_pct")),
|
||||||
|
rwm_high_girls_pct=parse_numeric(row.get("rwm_high_girls_pct")),
|
||||||
|
# Disadvantaged
|
||||||
|
rwm_expected_disadvantaged_pct=parse_numeric(
|
||||||
|
row.get("rwm_expected_disadvantaged_pct")
|
||||||
|
),
|
||||||
|
rwm_expected_non_disadvantaged_pct=parse_numeric(
|
||||||
|
row.get("rwm_expected_non_disadvantaged_pct")
|
||||||
|
),
|
||||||
|
disadvantaged_gap=parse_numeric(row.get("disadvantaged_gap")),
|
||||||
|
# 3-Year
|
||||||
|
rwm_expected_3yr_pct=parse_numeric(row.get("rwm_expected_3yr_pct")),
|
||||||
|
reading_avg_3yr=parse_numeric(row.get("reading_avg_3yr")),
|
||||||
|
maths_avg_3yr=parse_numeric(row.get("maths_avg_3yr")),
|
||||||
|
)
|
||||||
|
db.add(result)
|
||||||
|
results_created += 1
|
||||||
|
|
||||||
|
if results_created % 10000 == 0:
|
||||||
|
print(f" Created {results_created} results...")
|
||||||
|
db.flush()
|
||||||
|
|
||||||
|
print(f" Created {results_created} results")
|
||||||
|
|
||||||
|
# Commit all changes
|
||||||
|
db.commit()
|
||||||
|
print("\nMigration complete!")
|
||||||
|
|
||||||
|
|
||||||
|
def run_full_migration(geocode: bool = False) -> bool:
|
||||||
|
"""
|
||||||
|
Run a complete migration: drop all tables and reimport from CSV.
|
||||||
|
|
||||||
|
Returns True if successful, False if no data found.
|
||||||
|
Raises exception on error.
|
||||||
|
"""
|
||||||
|
print("Dropping existing tables...")
|
||||||
|
Base.metadata.drop_all(bind=engine)
|
||||||
|
|
||||||
|
print("Creating tables...")
|
||||||
|
Base.metadata.create_all(bind=engine)
|
||||||
|
|
||||||
|
print("\nLoading CSV data...")
|
||||||
|
df = load_csv_data(settings.data_dir)
|
||||||
|
|
||||||
|
if df.empty:
|
||||||
|
print("Warning: No CSV data found to migrate!")
|
||||||
|
return False
|
||||||
|
|
||||||
|
migrate_data(df, geocode=geocode)
|
||||||
|
return True
|
||||||
@@ -3,9 +3,11 @@ SQLAlchemy database models for school data.
|
|||||||
Normalized schema with separate tables for schools and yearly results.
|
Normalized schema with separate tables for schools and yearly results.
|
||||||
"""
|
"""
|
||||||
|
|
||||||
|
from datetime import datetime
|
||||||
|
|
||||||
from sqlalchemy import (
|
from sqlalchemy import (
|
||||||
Column, Integer, String, Float, ForeignKey, Index, UniqueConstraint,
|
Column, Integer, String, Float, ForeignKey, Index, UniqueConstraint,
|
||||||
Text, Boolean
|
Text, Boolean, DateTime
|
||||||
)
|
)
|
||||||
from sqlalchemy.orm import relationship
|
from sqlalchemy.orm import relationship
|
||||||
from .database import Base
|
from .database import Base
|
||||||
@@ -133,6 +135,21 @@ class SchoolResult(Base):
|
|||||||
return f"<SchoolResult(school_id={self.school_id}, year={self.year})>"
|
return f"<SchoolResult(school_id={self.school_id}, year={self.year})>"
|
||||||
|
|
||||||
|
|
||||||
|
class SchemaVersion(Base):
|
||||||
|
"""
|
||||||
|
Tracks database schema version for automatic migrations.
|
||||||
|
Single-row table that stores the current schema version.
|
||||||
|
"""
|
||||||
|
__tablename__ = "schema_version"
|
||||||
|
|
||||||
|
id = Column(Integer, primary_key=True, default=1)
|
||||||
|
version = Column(Integer, nullable=False)
|
||||||
|
migrated_at = Column(DateTime, default=datetime.utcnow, onupdate=datetime.utcnow)
|
||||||
|
|
||||||
|
def __repr__(self):
|
||||||
|
return f"<SchemaVersion(version={self.version}, migrated_at={self.migrated_at})>"
|
||||||
|
|
||||||
|
|
||||||
# Mapping from CSV columns to model fields
|
# Mapping from CSV columns to model fields
|
||||||
SCHOOL_FIELD_MAPPING = {
|
SCHOOL_FIELD_MAPPING = {
|
||||||
'urn': 'urn',
|
'urn': 'urn',
|
||||||
|
|||||||
22
backend/version.py
Normal file
22
backend/version.py
Normal file
@@ -0,0 +1,22 @@
|
|||||||
|
"""
|
||||||
|
Schema versioning for database migrations.
|
||||||
|
|
||||||
|
HOW TO USE:
|
||||||
|
- Bump SCHEMA_VERSION when making changes to database models
|
||||||
|
- This triggers an automatic full data reimport on next app startup
|
||||||
|
|
||||||
|
WHEN TO BUMP:
|
||||||
|
- Adding/removing columns in models.py
|
||||||
|
- Changing column types or constraints
|
||||||
|
- Modifying CSV column mappings in schemas.py
|
||||||
|
- Any change that requires fresh data import
|
||||||
|
"""
|
||||||
|
|
||||||
|
# Current schema version - increment when models change
|
||||||
|
SCHEMA_VERSION = 2
|
||||||
|
|
||||||
|
# Changelog for documentation
|
||||||
|
SCHEMA_CHANGELOG = {
|
||||||
|
1: "Initial schema with School and SchoolResult tables",
|
||||||
|
2: "Added pupil absence fields (reading, maths, gps, writing, science)",
|
||||||
|
}
|
||||||
@@ -1,16 +1,15 @@
|
|||||||
#!/usr/bin/env python3
|
#!/usr/bin/env python3
|
||||||
"""
|
"""
|
||||||
Migration script to import CSV data into PostgreSQL database.
|
CLI script for manual database migration.
|
||||||
|
|
||||||
Usage:
|
Usage:
|
||||||
python scripts/migrate_csv_to_db.py [--drop] [--geocode]
|
python scripts/migrate_csv_to_db.py [--drop] [--geocode]
|
||||||
|
|
||||||
Options:
|
Options:
|
||||||
--drop Drop existing tables before migration
|
--drop Drop existing tables before migration (full reimport)
|
||||||
--geocode Geocode postcodes (requires network access)
|
--geocode Geocode postcodes (requires network access)
|
||||||
"""
|
"""
|
||||||
|
|
||||||
import os
|
|
||||||
import sys
|
import sys
|
||||||
from pathlib import Path
|
from pathlib import Path
|
||||||
|
|
||||||
@@ -18,389 +17,11 @@ from pathlib import Path
|
|||||||
sys.path.insert(0, str(Path(__file__).parent.parent))
|
sys.path.insert(0, str(Path(__file__).parent.parent))
|
||||||
|
|
||||||
import argparse
|
import argparse
|
||||||
import re
|
|
||||||
from typing import Dict, Optional
|
|
||||||
|
|
||||||
import numpy as np
|
|
||||||
import pandas as pd
|
|
||||||
import requests
|
|
||||||
|
|
||||||
from backend.config import settings
|
from backend.config import settings
|
||||||
from backend.database import Base, engine, get_db_session
|
from backend.database import Base, engine, init_db, set_db_schema_version
|
||||||
from backend.models import (
|
from backend.migration import load_csv_data, migrate_data, run_full_migration
|
||||||
RESULT_FIELD_MAPPING,
|
from backend.version import SCHEMA_VERSION
|
||||||
SCHOOL_FIELD_MAPPING,
|
|
||||||
School,
|
|
||||||
SchoolResult,
|
|
||||||
)
|
|
||||||
from backend.schemas import (
|
|
||||||
COLUMN_MAPPINGS,
|
|
||||||
LA_CODE_TO_NAME,
|
|
||||||
NULL_VALUES,
|
|
||||||
NUMERIC_COLUMNS,
|
|
||||||
SCHOOL_TYPE_MAP,
|
|
||||||
)
|
|
||||||
|
|
||||||
|
|
||||||
def parse_numeric(value) -> Optional[float]:
|
|
||||||
"""Parse a numeric value, handling special cases."""
|
|
||||||
if pd.isna(value):
|
|
||||||
return None
|
|
||||||
if isinstance(value, (int, float)):
|
|
||||||
return float(value) if not np.isnan(value) else None
|
|
||||||
str_val = str(value).strip().upper()
|
|
||||||
if str_val in NULL_VALUES or str_val == "":
|
|
||||||
return None
|
|
||||||
# Remove percentage signs if present
|
|
||||||
str_val = str_val.replace("%", "")
|
|
||||||
try:
|
|
||||||
return float(str_val)
|
|
||||||
except ValueError:
|
|
||||||
return None
|
|
||||||
|
|
||||||
|
|
||||||
def extract_year_from_folder(folder_name: str) -> Optional[int]:
|
|
||||||
"""Extract year from folder name like '2023-2024'."""
|
|
||||||
match = re.search(r"(\d{4})-(\d{4})", folder_name)
|
|
||||||
if match:
|
|
||||||
return int(match.group(2))
|
|
||||||
match = re.search(r"(\d{4})", folder_name)
|
|
||||||
if match:
|
|
||||||
return int(match.group(1))
|
|
||||||
return None
|
|
||||||
|
|
||||||
|
|
||||||
def geocode_postcodes_bulk(postcodes: list) -> Dict[str, tuple]:
|
|
||||||
"""
|
|
||||||
Geocode postcodes in bulk using postcodes.io API.
|
|
||||||
Returns dict of postcode -> (latitude, longitude).
|
|
||||||
"""
|
|
||||||
results = {}
|
|
||||||
valid_postcodes = [
|
|
||||||
p.strip().upper()
|
|
||||||
for p in postcodes
|
|
||||||
if p and isinstance(p, str) and len(p.strip()) >= 5
|
|
||||||
]
|
|
||||||
valid_postcodes = list(set(valid_postcodes))
|
|
||||||
|
|
||||||
if not valid_postcodes:
|
|
||||||
return results
|
|
||||||
|
|
||||||
batch_size = 100
|
|
||||||
total_batches = (len(valid_postcodes) + batch_size - 1) // batch_size
|
|
||||||
|
|
||||||
for i, batch_start in enumerate(range(0, len(valid_postcodes), batch_size)):
|
|
||||||
batch = valid_postcodes[batch_start : batch_start + batch_size]
|
|
||||||
print(
|
|
||||||
f" Geocoding batch {i + 1}/{total_batches} ({len(batch)} postcodes)..."
|
|
||||||
)
|
|
||||||
|
|
||||||
try:
|
|
||||||
response = requests.post(
|
|
||||||
"https://api.postcodes.io/postcodes",
|
|
||||||
json={"postcodes": batch},
|
|
||||||
timeout=30,
|
|
||||||
)
|
|
||||||
if response.status_code == 200:
|
|
||||||
data = response.json()
|
|
||||||
for item in data.get("result", []):
|
|
||||||
if item and item.get("result"):
|
|
||||||
pc = item["query"].upper()
|
|
||||||
lat = item["result"].get("latitude")
|
|
||||||
lon = item["result"].get("longitude")
|
|
||||||
if lat and lon:
|
|
||||||
results[pc] = (lat, lon)
|
|
||||||
except Exception as e:
|
|
||||||
print(f" Warning: Geocoding batch failed: {e}")
|
|
||||||
|
|
||||||
return results
|
|
||||||
|
|
||||||
|
|
||||||
def load_csv_data(data_dir: Path) -> pd.DataFrame:
|
|
||||||
"""Load all CSV data from data directory."""
|
|
||||||
all_data = []
|
|
||||||
|
|
||||||
for folder in sorted(data_dir.iterdir()):
|
|
||||||
if not folder.is_dir():
|
|
||||||
continue
|
|
||||||
|
|
||||||
year = extract_year_from_folder(folder.name)
|
|
||||||
if not year:
|
|
||||||
continue
|
|
||||||
|
|
||||||
# Specifically look for the KS2 results file
|
|
||||||
ks2_file = folder / "england_ks2final.csv"
|
|
||||||
if not ks2_file.exists():
|
|
||||||
continue
|
|
||||||
|
|
||||||
csv_file = ks2_file
|
|
||||||
print(f" Loading {csv_file.name} (year {year})...")
|
|
||||||
|
|
||||||
try:
|
|
||||||
df = pd.read_csv(csv_file, encoding="latin-1", low_memory=False)
|
|
||||||
except Exception as e:
|
|
||||||
print(f" Error loading {csv_file}: {e}")
|
|
||||||
continue
|
|
||||||
|
|
||||||
# Rename columns
|
|
||||||
df.rename(columns=COLUMN_MAPPINGS, inplace=True)
|
|
||||||
df["year"] = year
|
|
||||||
|
|
||||||
# Handle local authority name
|
|
||||||
la_name_cols = ["LANAME", "LA (name)", "LA_NAME", "LA NAME"]
|
|
||||||
la_name_col = next((c for c in la_name_cols if c in df.columns), None)
|
|
||||||
|
|
||||||
if la_name_col and la_name_col != "local_authority":
|
|
||||||
df["local_authority"] = df[la_name_col]
|
|
||||||
elif "LEA" in df.columns:
|
|
||||||
df["local_authority_code"] = pd.to_numeric(df["LEA"], errors="coerce")
|
|
||||||
df["local_authority"] = (
|
|
||||||
df["local_authority_code"]
|
|
||||||
.map(LA_CODE_TO_NAME)
|
|
||||||
.fillna(df["LEA"].astype(str))
|
|
||||||
)
|
|
||||||
|
|
||||||
# Store LEA code
|
|
||||||
if "LEA" in df.columns:
|
|
||||||
df["local_authority_code"] = pd.to_numeric(df["LEA"], errors="coerce")
|
|
||||||
|
|
||||||
# Map school type
|
|
||||||
if "school_type_code" in df.columns:
|
|
||||||
df["school_type"] = (
|
|
||||||
df["school_type_code"]
|
|
||||||
.map(SCHOOL_TYPE_MAP)
|
|
||||||
.fillna(df["school_type_code"])
|
|
||||||
)
|
|
||||||
|
|
||||||
# Create combined address
|
|
||||||
addr_parts = ["address1", "address2", "town", "postcode"]
|
|
||||||
for col in addr_parts:
|
|
||||||
if col not in df.columns:
|
|
||||||
df[col] = None
|
|
||||||
|
|
||||||
df["address"] = df.apply(
|
|
||||||
lambda r: ", ".join(
|
|
||||||
str(v)
|
|
||||||
for v in [
|
|
||||||
r.get("address1"),
|
|
||||||
r.get("address2"),
|
|
||||||
r.get("town"),
|
|
||||||
r.get("postcode"),
|
|
||||||
]
|
|
||||||
if pd.notna(v) and str(v).strip()
|
|
||||||
),
|
|
||||||
axis=1,
|
|
||||||
)
|
|
||||||
|
|
||||||
all_data.append(df)
|
|
||||||
print(f" Loaded {len(df)} records")
|
|
||||||
|
|
||||||
if all_data:
|
|
||||||
result = pd.concat(all_data, ignore_index=True)
|
|
||||||
print(f"\nTotal records loaded: {len(result)}")
|
|
||||||
print(f"Unique schools: {result['urn'].nunique()}")
|
|
||||||
print(f"Years: {sorted(result['year'].unique())}")
|
|
||||||
return result
|
|
||||||
|
|
||||||
return pd.DataFrame()
|
|
||||||
|
|
||||||
|
|
||||||
def migrate_data(df: pd.DataFrame, geocode: bool = False):
|
|
||||||
"""Migrate DataFrame data to database."""
|
|
||||||
|
|
||||||
# Clean URN column - convert to integer, drop invalid values
|
|
||||||
df = df.copy()
|
|
||||||
df["urn"] = pd.to_numeric(df["urn"], errors="coerce")
|
|
||||||
df = df.dropna(subset=["urn"])
|
|
||||||
df["urn"] = df["urn"].astype(int)
|
|
||||||
|
|
||||||
# Group by URN to get unique schools (use latest year's data)
|
|
||||||
school_data = (
|
|
||||||
df.sort_values("year", ascending=False).groupby("urn").first().reset_index()
|
|
||||||
)
|
|
||||||
print(f"\nMigrating {len(school_data)} unique schools...")
|
|
||||||
|
|
||||||
# Geocode if requested
|
|
||||||
geocoded = {}
|
|
||||||
if geocode and "postcode" in df.columns:
|
|
||||||
print("\nGeocoding postcodes...")
|
|
||||||
postcodes = df["postcode"].dropna().unique().tolist()
|
|
||||||
geocoded = geocode_postcodes_bulk(postcodes)
|
|
||||||
print(f" Successfully geocoded {len(geocoded)} postcodes")
|
|
||||||
|
|
||||||
with get_db_session() as db:
|
|
||||||
# Create schools
|
|
||||||
urn_to_school_id = {}
|
|
||||||
schools_created = 0
|
|
||||||
|
|
||||||
for _, row in school_data.iterrows():
|
|
||||||
# Safely parse URN - handle None, NaN, whitespace, and invalid values
|
|
||||||
urn_val = row.get("urn")
|
|
||||||
urn = None
|
|
||||||
if pd.notna(urn_val):
|
|
||||||
try:
|
|
||||||
urn_str = str(urn_val).strip()
|
|
||||||
if urn_str:
|
|
||||||
urn = int(float(urn_str)) # Handle "12345.0" format
|
|
||||||
except (ValueError, TypeError):
|
|
||||||
pass
|
|
||||||
if not urn:
|
|
||||||
continue
|
|
||||||
|
|
||||||
# Skip if we've already added this URN (handles duplicates in source data)
|
|
||||||
if urn in urn_to_school_id:
|
|
||||||
continue
|
|
||||||
|
|
||||||
# Get geocoding data
|
|
||||||
postcode = row.get("postcode")
|
|
||||||
lat, lon = None, None
|
|
||||||
if postcode and pd.notna(postcode):
|
|
||||||
coords = geocoded.get(str(postcode).strip().upper())
|
|
||||||
if coords:
|
|
||||||
lat, lon = coords
|
|
||||||
|
|
||||||
# Safely parse local_authority_code
|
|
||||||
la_code = None
|
|
||||||
la_code_val = row.get("local_authority_code")
|
|
||||||
if pd.notna(la_code_val):
|
|
||||||
try:
|
|
||||||
la_code_str = str(la_code_val).strip()
|
|
||||||
if la_code_str:
|
|
||||||
la_code = int(float(la_code_str))
|
|
||||||
except (ValueError, TypeError):
|
|
||||||
pass
|
|
||||||
|
|
||||||
school = School(
|
|
||||||
urn=urn,
|
|
||||||
school_name=row.get("school_name")
|
|
||||||
if pd.notna(row.get("school_name"))
|
|
||||||
else "Unknown",
|
|
||||||
local_authority=row.get("local_authority")
|
|
||||||
if pd.notna(row.get("local_authority"))
|
|
||||||
else None,
|
|
||||||
local_authority_code=la_code,
|
|
||||||
school_type=row.get("school_type")
|
|
||||||
if pd.notna(row.get("school_type"))
|
|
||||||
else None,
|
|
||||||
school_type_code=row.get("school_type_code")
|
|
||||||
if pd.notna(row.get("school_type_code"))
|
|
||||||
else None,
|
|
||||||
religious_denomination=row.get("religious_denomination")
|
|
||||||
if pd.notna(row.get("religious_denomination"))
|
|
||||||
else None,
|
|
||||||
age_range=row.get("age_range")
|
|
||||||
if pd.notna(row.get("age_range"))
|
|
||||||
else None,
|
|
||||||
address1=row.get("address1") if pd.notna(row.get("address1")) else None,
|
|
||||||
address2=row.get("address2") if pd.notna(row.get("address2")) else None,
|
|
||||||
town=row.get("town") if pd.notna(row.get("town")) else None,
|
|
||||||
postcode=row.get("postcode") if pd.notna(row.get("postcode")) else None,
|
|
||||||
latitude=lat,
|
|
||||||
longitude=lon,
|
|
||||||
)
|
|
||||||
db.add(school)
|
|
||||||
db.flush() # Get the ID
|
|
||||||
urn_to_school_id[urn] = school.id
|
|
||||||
schools_created += 1
|
|
||||||
|
|
||||||
if schools_created % 1000 == 0:
|
|
||||||
print(f" Created {schools_created} schools...")
|
|
||||||
|
|
||||||
print(f" Created {schools_created} schools")
|
|
||||||
|
|
||||||
# Create results
|
|
||||||
print(f"\nMigrating {len(df)} yearly results...")
|
|
||||||
results_created = 0
|
|
||||||
|
|
||||||
for _, row in df.iterrows():
|
|
||||||
# Safely parse URN
|
|
||||||
urn_val = row.get("urn")
|
|
||||||
urn = None
|
|
||||||
if pd.notna(urn_val):
|
|
||||||
try:
|
|
||||||
urn_str = str(urn_val).strip()
|
|
||||||
if urn_str:
|
|
||||||
urn = int(float(urn_str))
|
|
||||||
except (ValueError, TypeError):
|
|
||||||
pass
|
|
||||||
if not urn or urn not in urn_to_school_id:
|
|
||||||
continue
|
|
||||||
|
|
||||||
school_id = urn_to_school_id[urn]
|
|
||||||
|
|
||||||
# Safely parse year
|
|
||||||
year_val = row.get("year")
|
|
||||||
year = None
|
|
||||||
if pd.notna(year_val):
|
|
||||||
try:
|
|
||||||
year = int(float(str(year_val).strip()))
|
|
||||||
except (ValueError, TypeError):
|
|
||||||
pass
|
|
||||||
if not year:
|
|
||||||
continue
|
|
||||||
|
|
||||||
result = SchoolResult(
|
|
||||||
school_id=school_id,
|
|
||||||
year=year,
|
|
||||||
total_pupils=parse_numeric(row.get("total_pupils")),
|
|
||||||
eligible_pupils=parse_numeric(row.get("eligible_pupils")),
|
|
||||||
# Expected Standard
|
|
||||||
rwm_expected_pct=parse_numeric(row.get("rwm_expected_pct")),
|
|
||||||
reading_expected_pct=parse_numeric(row.get("reading_expected_pct")),
|
|
||||||
writing_expected_pct=parse_numeric(row.get("writing_expected_pct")),
|
|
||||||
maths_expected_pct=parse_numeric(row.get("maths_expected_pct")),
|
|
||||||
gps_expected_pct=parse_numeric(row.get("gps_expected_pct")),
|
|
||||||
science_expected_pct=parse_numeric(row.get("science_expected_pct")),
|
|
||||||
# Higher Standard
|
|
||||||
rwm_high_pct=parse_numeric(row.get("rwm_high_pct")),
|
|
||||||
reading_high_pct=parse_numeric(row.get("reading_high_pct")),
|
|
||||||
writing_high_pct=parse_numeric(row.get("writing_high_pct")),
|
|
||||||
maths_high_pct=parse_numeric(row.get("maths_high_pct")),
|
|
||||||
gps_high_pct=parse_numeric(row.get("gps_high_pct")),
|
|
||||||
# Progress
|
|
||||||
reading_progress=parse_numeric(row.get("reading_progress")),
|
|
||||||
writing_progress=parse_numeric(row.get("writing_progress")),
|
|
||||||
maths_progress=parse_numeric(row.get("maths_progress")),
|
|
||||||
# Averages
|
|
||||||
reading_avg_score=parse_numeric(row.get("reading_avg_score")),
|
|
||||||
maths_avg_score=parse_numeric(row.get("maths_avg_score")),
|
|
||||||
gps_avg_score=parse_numeric(row.get("gps_avg_score")),
|
|
||||||
# Context
|
|
||||||
disadvantaged_pct=parse_numeric(row.get("disadvantaged_pct")),
|
|
||||||
eal_pct=parse_numeric(row.get("eal_pct")),
|
|
||||||
sen_support_pct=parse_numeric(row.get("sen_support_pct")),
|
|
||||||
sen_ehcp_pct=parse_numeric(row.get("sen_ehcp_pct")),
|
|
||||||
stability_pct=parse_numeric(row.get("stability_pct")),
|
|
||||||
# Gender
|
|
||||||
rwm_expected_boys_pct=parse_numeric(row.get("rwm_expected_boys_pct")),
|
|
||||||
rwm_expected_girls_pct=parse_numeric(row.get("rwm_expected_girls_pct")),
|
|
||||||
rwm_high_boys_pct=parse_numeric(row.get("rwm_high_boys_pct")),
|
|
||||||
rwm_high_girls_pct=parse_numeric(row.get("rwm_high_girls_pct")),
|
|
||||||
# Disadvantaged
|
|
||||||
rwm_expected_disadvantaged_pct=parse_numeric(
|
|
||||||
row.get("rwm_expected_disadvantaged_pct")
|
|
||||||
),
|
|
||||||
rwm_expected_non_disadvantaged_pct=parse_numeric(
|
|
||||||
row.get("rwm_expected_non_disadvantaged_pct")
|
|
||||||
),
|
|
||||||
disadvantaged_gap=parse_numeric(row.get("disadvantaged_gap")),
|
|
||||||
# 3-Year
|
|
||||||
rwm_expected_3yr_pct=parse_numeric(row.get("rwm_expected_3yr_pct")),
|
|
||||||
reading_avg_3yr=parse_numeric(row.get("reading_avg_3yr")),
|
|
||||||
maths_avg_3yr=parse_numeric(row.get("maths_avg_3yr")),
|
|
||||||
)
|
|
||||||
db.add(result)
|
|
||||||
results_created += 1
|
|
||||||
|
|
||||||
if results_created % 10000 == 0:
|
|
||||||
print(f" Created {results_created} results...")
|
|
||||||
db.flush()
|
|
||||||
|
|
||||||
print(f" Created {results_created} results")
|
|
||||||
|
|
||||||
# Commit all changes
|
|
||||||
db.commit()
|
|
||||||
print("\nMigration complete!")
|
|
||||||
|
|
||||||
|
|
||||||
def main():
|
def main():
|
||||||
@@ -418,24 +39,29 @@ def main():
|
|||||||
print("=" * 60)
|
print("=" * 60)
|
||||||
print(f"\nDatabase: {settings.database_url.split('@')[-1]}")
|
print(f"\nDatabase: {settings.database_url.split('@')[-1]}")
|
||||||
print(f"Data directory: {settings.data_dir}")
|
print(f"Data directory: {settings.data_dir}")
|
||||||
|
print(f"Target schema version: {SCHEMA_VERSION}")
|
||||||
|
|
||||||
if args.drop:
|
if args.drop:
|
||||||
print("\n⚠️ Dropping existing tables...")
|
print("\nRunning full migration (drop + reimport)...")
|
||||||
Base.metadata.drop_all(bind=engine)
|
success = run_full_migration(geocode=args.geocode)
|
||||||
|
else:
|
||||||
print("\nCreating tables...")
|
print("\nCreating tables (preserving existing data)...")
|
||||||
Base.metadata.create_all(bind=engine)
|
init_db()
|
||||||
|
|
||||||
print("\nLoading CSV data...")
|
print("\nLoading CSV data...")
|
||||||
df = load_csv_data(settings.data_dir)
|
df = load_csv_data(settings.data_dir)
|
||||||
|
|
||||||
if df.empty:
|
if df.empty:
|
||||||
print("No data found to migrate!")
|
print("No data found to migrate!")
|
||||||
return 1
|
return 1
|
||||||
|
|
||||||
migrate_data(df, geocode=args.geocode)
|
migrate_data(df, geocode=args.geocode)
|
||||||
|
success = True
|
||||||
|
|
||||||
return 0
|
if success:
|
||||||
|
# Ensure schema_version table exists
|
||||||
|
init_db()
|
||||||
|
set_db_schema_version(SCHEMA_VERSION)
|
||||||
|
print(f"\nSchema version set to {SCHEMA_VERSION}")
|
||||||
|
|
||||||
|
return 0 if success else 1
|
||||||
|
|
||||||
|
|
||||||
if __name__ == "__main__":
|
if __name__ == "__main__":
|
||||||
|
|||||||
Reference in New Issue
Block a user